VARPIN - Variant Prioritization and Interpretation for Genetic Analysis

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First 1000 Variants

ID Gene Name Chr Start End Ref -> Alt VARPIN Score
1 ERBB4 chr2 212652745 212652745 C -> T 240
17 SMARCB1 chr22 24145582 24145582 C -> T 83.104997273706
18 VHL chr3 10188251 10188251 C -> T 82.374518238208
19 TP53 chr17 7578492 7578492 C -> T 82.374518238208
24 ATM chr11 108200960 108200960 C -> T 73.104997273706
25 MLH1 chr3 37067308 37067308 C -> T 70.751576357205
26 ERBB4 chr2 212652818 212652818 C -> T 65.276940212604
27 IDH1 chr2 209113135 209113135 C -> T 63.94134040461
28 IDH1 chr2 209113136 209113136 C -> T 63.94134040461
29 ERBB4 chr2 212289014 212289014 C -> T 63.94134040461
30 CTNNB1 chr3 41266079 41266079 C -> T 63.94134040461
31 PIK3CA chr3 178916899 178916899 C -> T 63.94134040461
32 PIK3CA chr3 178916956 178916956 C -> T 63.94134040461
33 FBXW7 chr4 153245494 153245494 C -> T 63.94134040461
34 MET chr7 116423497 116423497 C -> T 63.94134040461
35 SMO chr7 128845158 128845158 C -> T 63.94134040461
37 FGFR2 chr10 123279567 123279567 G -> A 63.94134040461
38 FGFR2 chr10 123279579 123279579 G -> A 63.94134040461
39 ATM chr11 108172490 108172490 C -> T 63.94134040461
40 PTPN11 chr12 112888219 112888219 C -> T 63.94134040461
41 PTPN11 chr12 112926908 112926908 C -> T 63.94134040461
42 PTPN11 chr12 112926935 112926935 C -> T 63.94134040461
43 HNF1A chr12 121431427 121431427 C -> T 63.94134040461
44 FLT3 chr13 28608248 28608248 C -> T 63.94134040461
45 SMAD4 chr18 48581201 48581201 C -> T 63.94134040461
46 SMAD4 chr18 48581243 48581243 C -> T 63.94134040461
47 SMAD4 chr18 48603062 48603062 C -> T 63.94134040461
48 SMAD4 chr18 48603080 48603080 C -> T 63.94134040461
49 GNA11 chr19 3114991 3114991 C -> T 63.94134040461
50 GNA11 chr19 3114994 3114994 C -> T 63.94134040461
51 JAK3 chr19 17945790 17945790 C -> T 63.94134040461
52 JAK3 chr19 17945791 17945791 C -> T 63.94134040461
53 PIK3CA chr3 178951985 178951985 C -> T 63.592374765236
54 PIK3CA chr3 178952012 178952012 C -> T 63.592374765236
55 PIK3CA chr3 178952097 178952097 G -> A 63.592374765236
57 ATM chr11 108180960 108180960 C -> T 63.592374765236
58 SMAD4 chr18 48604724 48604724 C -> T 63.592374765236
59 PDGFRA chr4 55152050 55152050 C -> T 63.539526603504
60 NPM1 chr5 170837537 170837537 C -> T 63.190560964129
61 PIK3CA chr3 178938940 178938940 C -> T 63.137712802397
62 SMO chr7 128845188 128845188 C -> T 63.137712802397
63 SMAD4 chr18 48584575 48584575 C -> T 63.137712802397
64 GNA11 chr19 3120992 3120992 C -> T 62.788747163023
65 EGFR chr7 55211178 55211178 C -> T 61.740680501638
66 KDR chr4 55961087 55961087 G -> C 60.67842779049
67 ERBB4 chr2 212578361 212578361 A -> - 60
68 ERBB4 chr2 212812214 212812214 A -> - 60
69 VHL chr3 10188324 10188324 C -> T 60
70 PIK3CA chr3 178951995 178951998 ATGA -> - 60
71 PIK3CA chr3 178952007 178952008 AC -> - 60
72 FGFR3 chr4 1806180 1806180 - -> C 60
73 FGFR3 chr4 1806181 1806181 C -> - 60
74 FGFR3 chr4 1807975 1807975 C -> T 60
75 KIT chr4 55593372 55593372 C -> T 60
76 KIT chr4 55595556 55595556 G -> - 60
77 KDR chr4 55953932 55953932 C -> T 60
78 KDR chr4 55955148 55955148 A -> G 60
79 KDR chr4 55955150 55955150 C -> T 60
80 FBXW7 chr4 153245559 153245559 C -> T 60
82 CSF1R chr5 149453133 149453133 C -> T 60
83 EGFR chr7 55221852 55221852 C -> T 60
84 EGFR chr7 55221882 55221882 C -> T 60
85 MET chr7 116412054 116412054 G -> C 60
86 FGFR1 chr8 38282307 38282307 C -> T 60
87 FGFR1 chr8 38286048 38286048 C -> T 60
88 GNAQ chr9 80336380 80336380 G -> - 60
89 GNAQ chr9 80409520 80409520 A -> G 60
90 GNAQ chr9 80409521 80409521 C -> T 60
91 ABL1 chr9 133748239 133748239 G -> A 60
92 NOTCH1 chr9 139397829 139397829 C -> T 60
93 NOTCH1 chr9 139397836 139397836 C -> T 60
97 PTEN chr10 89624310 89624310 C -> T 60
98 PTEN chr10 89720883 89720883 A -> G 60
99 PTEN chr10 89720899 89720899 G -> A 60
100 FGFR2 chr10 123258075 123258076 CC -> - 60
101 FGFR2 chr10 123279443 123279443 C -> T 60
102 FGFR2 chr10 123279457 123279457 C -> T 60
103 FGFR2 chr10 123279641 123279641 G -> - 60
104 ATM chr11 108117858 108117858 C -> T 60
105 ATM chr11 108170487 108170488 TA -> - 60
106 ATM chr11 108172521 108172521 C -> T 60
107 ATM;C11orf65 chr11 108205843 108205843 C -> T 60
108 KRAS chr12 25398362 25398362 T -> C 60
109 PTPN11 chr12 112926984 112926984 C -> T 60
110 HNF1A chr12 121432118 121432118 C -> - 60
111 FLT3 chr13 28592731 28592731 C -> T 60
112 FLT3 chr13 28608355 28608355 C -> T 60
113 FLT3 chr13 28610163 28610163 C -> - 60
114 FLT3 chr13 28610190 28610190 A -> G 60
115 RB1 chr13 48919207 48919207 C -> T 60
116 RB1 chr13 48919236 48919237 TA -> - 60
117 RB1 chr13 48955627 48955627 A -> G 60
118 RB1 chr13 49027253 49027253 C -> T 60
119 RB1 chr13 49037863 49037863 C -> T 60
120 RB1 chr13 49039173 49039174 TC -> - 60
121 AKT1 chr14 105246561 105246561 C -> T 60
122 CDH1 chr16 68846173 68846173 C -> T 60
123 TP53 chr17 7577031 7577031 T -> - 60
124 ERBB2 chr17 37880269 37880269 C -> T 60
125 ERBB2 chr17 37881007 37881007 C -> - 60
126 STK11 chr19 1221342 1221342 G -> A 60
127 GNA11 chr19 3114930 3114930 G -> A 60
128 GNA11 chr19 3114938 3114938 G -> A 60
129 GNA11 chr19 3115074 3115074 C -> T 60
130 GNA11 chr19 3115075 3115075 C -> T 60
131 GNA11 chr19 3118934 3118934 G -> - 60
132 GNA11 chr19 3119360 3119360 G -> A 60
133 GNAS chr20 57484485 57484485 C -> T 60
134 SMARCB1 chr22 24143259 24143259 - -> C 60
135 SMARCB1 chr22 24143326 24143326 C -> T 60
136 SMARCB1 chr22 24145615 24145615 A -> G 60
137 SMARCB1 chr22 24176358 24176358 G -> - 60
138 TP53 chr17 7578152 7578152 C -> T 59.910232690363
139 PDGFRA chr4 55152137 55152137 C -> T 50
140 MET chr7 116340346 116340346 A -> G 50
141 NOTCH1 chr9 139397788 139397788 C -> T 50
142 STK11 chr19 1223178 1223178 C -> T 50
144 HNF1A chr12 121432068 121432068 G -> A 38.475407429501
145 TP53 chr17 7578406 7578406 C -> T 38.475407429501
146 HRAS chr11 533877 533877 C -> T 38.263294761321
147 BRAF chr7 140481402 140481402 C -> T 37.738702190822
148 TP53 chr17 7577548 7577548 C -> T 37.738702190822
149 TP53 chr17 7578197 7578197 C -> T 37.738702190822
150 TP53 chr17 7578395 7578395 G -> A 37.738702190822
151 SMARCB1 chr22 24133992 24133992 C -> T 37.738702190822
152 PTPN11 chr12 112888211 112888211 A -> G 37.260817795011
155 KRAS chr12 25398279 25398279 C -> T 36.030909650149
156 SMO chr7 128846398 128846398 C -> T 35.98123517432
158 TP53 chr17 7578475 7578475 G -> A 35.188834311226
160 FLT3 chr13 28592642 28592642 C -> T 33.629091188711
161 RB1 chr13 49037957 49037957 C -> T 32.109238175573
162 KIT chr4 55592275 55592275 C -> T 30
163 KIT chr4 55593555 55593555 G -> A 30
164 KIT chr4 55597606 55597606 C -> T 30
165 MET chr7 116340380 116340380 A -> G 30
166 GNAQ chr9 80343365 80343365 C -> T 30
167 GNAQ chr9 80409581 80409581 C -> T 30
168 PTEN chr10 89720888 89720888 A -> G 30
169 PTEN chr10 89720902 89720902 G -> A 30
170 FGFR2 chr10 123274869 123274869 C -> T 30
171 FGFR2 chr10 123274873 123274873 C -> T 30
172 HRAS chr11 533970 533970 C -> T 30
173 TP53 chr17 7578101 7578101 C -> T 30
174 TP53 chr17 7578312 7578312 C -> T 30
175 TP53 chr17 7579984 7579984 C -> T 30
176 JAK3 chr19 17948070 17948070 C -> T 30
177 JAK3 chr19 17948128 17948128 C -> T 30
178 KRAS chr12 25398285 25398285 C -> T 29.281600544327
179 BRAF chr7 140481403 140481403 C -> T 28.263294761321
180 KIT chr4 55593606 55593606 A -> G 27.738702190822
181 TP53 chr17 7577082 7577082 C -> T 27.738702190822
182 TP53 chr17 7578272 7578272 G -> A 27.738702190822
183 TP53 chr17 7578413 7578413 C -> T 27.738702190822
184 EGFR chr7 55242428 55242428 C -> T 25.687040083513
185 KRAS chr12 25378643 25378643 C -> T 25.68075329602
186 ATM chr11 108180982 108180982 C -> T 25.375578463675
187 EGFR chr7 55221822 55221822 C -> T 24.897694067864
188 BRAF chr7 140481417 140481417 C -> T 24.327544424612
189 BRAF chr7 140453137 140453137 C -> T 23.311874059196
190 ATM chr11 108236086 108236086 C -> T 21.741815292413
191 EGFR chr7 55242487 55242487 C -> T 20.21107108404
192 FGFR2 chr10 123258070 123258070 C -> T 18.402247211957
193 ERBB4 chr2 212530153 212530153 C -> T 18.263294761321
194 ERBB4 chr2 212530180 212530180 C -> T 18.263294761321
195 ERBB4 chr2 212589841 212589841 C -> T 18.263294761321
196 ERBB4 chr2 212589856 212589856 C -> T 18.263294761321
197 ERBB4 chr2 212652839 212652839 C -> T 18.263294761321
198 KIT chr4 55602740 55602740 C -> T 18.263294761321
199 GNAQ chr9 80343516 80343516 G -> A 18.263294761321
200 GNAQ chr9 80343571 80343571 C -> T 18.263294761321
201 GNAQ chr9 80409420 80409420 G -> A 18.263294761321
202 GNAQ chr9 80409440 80409440 G -> A 18.263294761321
203 GNAQ chr9 80409462 80409462 G -> A 18.263294761321
204 GNAQ chr9 80409495 80409495 C -> T 18.263294761321
205 ATM chr11 108205805 108205805 C -> T 18.263294761321
206 ATM chr11 108205828 108205828 C -> T 18.263294761321
207 ATM chr11 108236197 108236197 C -> T 18.263294761321
208 KRAS chr12 25380294 25380294 A -> G 18.263294761321
209 PTPN11 chr12 112888286 112888286 C -> T 18.263294761321
210 FLT3 chr13 28592654 28592654 C -> T 18.263294761321
214 STK11 chr19 1220487 1220487 G -> C 18.263294761321
215 GNAS chr20 57484417 57484417 T -> C 18.263294761321
217 ERBB4 chr2 212587142 212587142 C -> T 17.738702190822
218 ERBB4 chr2 212589839 212589839 C -> T 17.738702190822
220 MLH1 chr3 37067242 37067242 C -> T 17.738702190822
221 MLH1 chr3 37067254 37067254 C -> T 17.738702190822
222 PIK3CA chr3 178952019 178952019 C -> T 17.738702190822
223 KIT chr4 55593660 55593660 C -> T 17.738702190822
224 KIT chr4 55594245 55594245 C -> T 17.738702190822
225 KIT chr4 55595566 55595566 C -> T 17.738702190822
226 KIT chr4 55602691 55602691 C -> T 17.738702190822
227 KIT chr4 55602719 55602719 C -> T 17.738702190822
228 KIT chr4 55602757 55602757 T -> G 17.738702190822
231 EGFR chr7 55249037 55249037 G -> A 17.738702190822
232 EGFR chr7 55249038 55249038 G -> A 17.738702190822
233 EGFR chr7 55249088 55249088 G -> A 17.738702190822
234 SMO chr7 128845174 128845174 C -> T 17.738702190822
235 SMO chr7 128845185 128845185 C -> T 17.738702190822
236 SMO chr7 128846095 128846095 C -> T 17.738702190822
237 SMO chr7 128850371 128850371 G -> T 17.738702190822
238 ABL1 chr9 133738408 133738408 G -> C 17.738702190822
239 ABL1 chr9 133747541 133747541 T -> C 17.738702190822
240 ABL1 chr9 133748420 133748420 C -> T 17.738702190822
243 ATM chr11 108200979 108200979 A -> G 17.738702190822
244 ATM chr11 108201014 108201014 C -> T 17.738702190822
245 HNF1A chr12 121432091 121432091 A -> G 17.738702190822
246 FLT3 chr13 28608261 28608261 A -> T 17.738702190822
247 FLT3 chr13 28610174 28610174 G -> A 17.738702190822
248 FLT3 chr13 28610175 28610175 G -> A 17.738702190822
249 RB1 chr13 48942731 48942731 C -> T 17.738702190822
250 RB1 chr13 48955563 48955563 C -> T 17.738702190822
251 RB1 chr13 48955569 48955569 C -> T 17.738702190822
252 RB1 chr13 49027216 49027216 C -> T 17.738702190822
253 RB1 chr13 49033908 49033908 C -> T 17.738702190822
254 RB1 chr13 49033943 49033943 C -> T 17.738702190822
255 RB1 chr13 49039174 49039174 C -> T 17.738702190822
256 TP53 chr17 7577568 7577568 C -> T 17.738702190822
257 TP53 chr17 7578182 7578182 G -> A 17.738702190822
258 TP53 chr17 7578401 7578401 G -> A 17.738702190822
259 SMAD4 chr18 48575222 48575222 C -> T 17.738702190822
260 SMAD4 chr18 48586275 48586275 C -> T 17.738702190822
261 SMAD4 chr18 48593453 48593453 C -> T 17.738702190822
262 SMAD4 chr18 48604766 48604766 C -> T 17.738702190822
263 STK11 chr19 1207088 1207088 C -> T 17.738702190822
264 SMARCB1 chr22 24133997 24133997 C -> T 17.738702190822
265 NRAS chr1 115258754 115258754 C -> T 17.415021181208
266 PDGFRA chr4 55141012 55141012 C -> T 17.415021181208
267 PDGFRA chr4 55141084 55141084 C -> T 17.415021181208
268 GNAS chr20 57484463 57484463 A -> T 17.376857724733
269 FGFR3 chr4 1803580 1803580 C -> T 17.260817795011
270 KIT chr4 55593655 55593655 C -> T 17.260817795011
271 EGFR chr7 55241726 55241726 C -> T 17.260817795011
272 GNAQ chr9 80343579 80343579 C -> T 17.260817795011
274 PTEN chr10 89711993 89711993 C -> T 17.260817795011
277 PTPN11 chr12 112888199 112888199 C -> T 17.260817795011
279 PDGFRA chr4 55141045 55141045 C -> T 16.890428610709
280 PDGFRA chr4 55141062 55141062 C -> T 16.890428610709
281 NOTCH1 chr9 139399411 139399411 C -> T 16.890428610709
282 NOTCH1 chr9 139399414 139399414 C -> T 16.890428610709
283 NOTCH1 chr9 139399429 139399429 C -> T 16.890428610709
284 PIK3CA chr3 178951968 178951968 C -> T 16.852265154234
285 GNAQ chr9 80343575 80343575 C -> T 16.852265154234
286 TP53 chr17 7577605 7577605 C -> T 16.852265154234
287 TP53 chr17 7578400 7578400 G -> A 16.852265154234
289 FGFR3 chr4 1808338 1808338 C -> T 16.689517049824
290 KIT chr4 55594239 55594239 G -> C 16.689517049824
296 EGFR chr7 55242452 55242452 C -> T 16.689517049824
297 EGFR chr7 55242482 55242482 C -> T 16.689517049824
298 SMO chr7 128851597 128851597 C -> T 16.689517049824
299 ABL1 chr9 133738400 133738400 C -> T 16.689517049824
300 FGFR2 chr10 123258056 123258056 C -> T 16.689517049824
301 FGFR2 chr10 123258067 123258067 C -> T 16.689517049824
302 FGFR2 chr10 123258075 123258075 C -> T 16.689517049824
303 FLT3 chr13 28592705 28592705 C -> T 16.689517049824
304 FLT3 chr13 28592708 28592708 C -> T 16.689517049824
305 FLT3 chr13 28602330 28602330 C -> T 16.689517049824
306 FLT3 chr13 28602363 28602363 C -> T 16.689517049824
307 JAK3 chr19 17948013 17948013 C -> T 16.689517049824
308 GNA11 chr19 3115012 3115012 C -> T 16.652106236922
309 GNA11 chr19 3121082 3121082 A -> G 16.652106236922
310 EGFR chr7 55211110 55211110 C -> T 16.599863918314
311 CDH1 chr16 68846147 68846147 C -> T 16.599863918314
312 NRAS chr1 115258738 115258738 C -> T 16.528584144619
313 ERBB2 chr17 37881353 37881353 C -> T 16.498441119039
314 MET chr7 116417463 116417463 C -> T 16.395035348616
317 FLT3 chr13 28592725 28592725 C -> T 16.164924479324
318 MLH1 chr3 37067266 37067266 C -> T 16.127513666423
319 KIT chr4 55595552 55595552 T -> C 16.127513666423
320 RB1 chr13 49033856 49033856 C -> T 16.127513666423
321 SMO chr7 128846079 128846079 T -> C 16.042155030595
322 PIK3CA chr3 178936074 178936074 C -> T 15.98123517432
325 IDH1 chr2 209113115 209113115 C -> T 15.900171034174
326 IDH1 chr2 209113116 209113116 C -> T 15.900171034174
327 IDH1 chr2 209113193 209113193 C -> T 15.900171034174
328 IDH1 chr2 209113218 209113218 C -> T 15.900171034174
329 ERBB4 chr2 212576898 212576898 C -> T 15.900171034174
330 ERBB4 chr2 212587255 212587255 C -> T 15.900171034174
331 KDR chr4 55980366 55980366 A -> G 15.900171034174
332 ABL1 chr9 133750389 133750389 C -> T 15.900171034174
333 AKT1 chr14 105246553 105246553 C -> T 15.900171034174
334 PDGFRA chr4 55144576 55144576 A -> T 15.84124346971
335 EGFR chr7 55249002 55249002 C -> T 15.803080013235
337 PIK3CA chr3 178938913 178938913 C -> T 15.772088807281
338 ATM chr11 108236140 108236140 C -> T 15.772088807281
339 HNF1A chr12 121431493 121431493 G -> A 15.772088807281
341 CTNNB1 chr3 41266125 41266125 C -> T 15.748116060901
342 GNAQ chr9 80412509 80412509 C -> T 15.68075329602
343 SMAD4 chr18 48593520 48593520 A -> G 15.626607231903
344 RB1 chr13 48942724 48942724 C -> T 15.503350778508
345 IDH1 chr2 209113234 209113234 C -> T 15.491618393397
346 ERBB4 chr2 212530078 212530078 C -> T 15.422286638363
347 RB1 chr13 48942725 48942725 C -> T 15.4186119668
348 ERBB4 chr2 212288997 212288997 C -> T 15.375578463675
349 ERBB4 chr2 212576887 212576887 C -> T 15.375578463675
350 ERBB4 chr2 212576893 212576893 C -> T 15.375578463675
351 PIK3CA chr3 178927990 178927990 C -> T 15.375578463675
352 PIK3CA chr3 178951961 178951961 C -> T 15.375578463675
353 FBXW7 chr4 153247306 153247306 C -> T 15.375578463675
354 FBXW7 chr4 153249420 153249420 C -> T 15.375578463675
355 EGFR chr7 55242458 55242458 C -> T 15.375578463675
356 EGFR chr7 55259518 55259518 C -> T 15.375578463675
357 ABL1 chr9 133750374 133750374 C -> T 15.375578463675
358 FGFR2 chr10 123279575 123279575 G -> A 15.375578463675
359 FGFR2 chr10 123279621 123279621 C -> T 15.375578463675
360 ATM chr11 108173746 108173746 C -> T 15.375578463675
361 ATM chr11 108180973 108180973 C -> T 15.375578463675
362 ATM chr11 108201042 108201042 A -> G 15.375578463675
363 AKT1 chr14 105246490 105246490 C -> T 15.375578463675
364 FLT3 chr13 28608294 28608294 C -> T 15.29420441147
365 RB1 chr13 49033940 49033940 G -> A 15.29420441147
366 FLT3 chr13 28592680 28592680 C -> T 15.278487442736
367 TP53 chr17 7577090 7577090 C -> T 15.241076629835
368 NOTCH1 chr9 139399459 139399459 C -> T 15.226997767701
369 EGFR chr7 55242485 55242485 C -> T 15.15616072552
370 FLT3 chr13 28592714 28592714 C -> T 15.15616072552
371 TP53 chr17 7578281 7578281 G -> A 15.15616072552
372 KRAS chr12 25378571 25378571 C -> T 15.155717994007
373 NRAS chr1 115258733 115258733 T -> C 15.051897454061
374 ERBB2 chr17 37880235 37880235 C -> T 15.00749381341
375 ERBB2 chr17 37880238 37880238 C -> T 15.00749381341
376 ERBB2 chr17 37881087 37881087 C -> T 14.972051990661
377 SMO chr7 128846127 128846127 C -> T 14.932050033321
378 SMO chr7 128846167 128846167 C -> T 14.932050033321
379 FLT3 chr13 28592681 28592681 C -> T 14.932050033321
380 SMAD4 chr18 48591873 48591873 C -> T 14.932050033321
381 SMAD4 chr18 48603116 48603116 G -> C 14.932050033321
382 NRAS chr1 115258763 115258763 C -> T 14.923815227168
383 ERBB4 chr2 212576881 212576881 C -> T 14.897694067864
384 FLT3 chr13 28608339 28608339 C -> T 14.897694067864
385 NRAS chr1 115256542 115256542 C -> T 14.832479715906
386 EGFR chr7 55242451 55242451 C -> T 14.777979466578
387 EGFR chr7 55242488 55242488 C -> T 14.777979466578
388 SMARCB1 chr22 24176351 24176351 C -> T 14.722903666283
389 SMARCB1 chr22 24176356 24176356 C -> T 14.722903666283
390 SMAD4 chr18 48603066 48603066 C -> T 14.678276329709
391 HNF1A chr12 121432157 121432157 C -> T 14.548201811005
392 FGFR3 chr4 1808320 1808320 C -> T 14.5105113782
393 ERBB2 chr17 37880232 37880232 C -> T 14.5105113782
395 TP53 chr17 7578458 7578458 G -> A 14.464082823415
397 ERBB2 chr17 37881335 37881335 C -> T 14.384137162883
398 EGFR chr7 55242508 55242508 C -> T 14.369426825801
399 SMAD4 chr18 48603135 48603135 C -> T 14.369426825801
400 PIK3CA chr3 178951929 178951929 C -> T 14.326393322677
401 FGFR3 chr4 1803670 1803670 C -> T 14.326393322677
402 ERBB4 chr2 212288993 212288993 C -> T 14.311119085457
403 JAK3 chr19 17945786 17945786 C -> T 14.288982509775
405 IDH1 chr2 209113194 209113194 C -> T 14.203623873947
406 SMO chr7 128846050 128846050 C -> T 14.192954044469
407 GNAQ chr9 80343439 80343439 C -> T 14.192954044469
408 KRAS chr12 25378577 25378577 A -> G 14.192954044469
409 HNF1A chr12 121431446 121431446 C -> T 14.191891488836
410 ATM chr11 108206681 108206681 C -> T 14.142704017672
411 FGFR2 chr10 123279581 123279581 G -> A 13.929573067011
412 PDGFRA chr4 55152108 55152108 C -> T 13.889948596541
413 ERBB4 chr2 212288946 212288946 C -> T 13.844834255302
414 EGFR chr7 55241711 55241711 C -> T 13.755181123792
415 KIT chr4 55593414 55593414 C -> T 13.712147620668
416 SMAD4 chr18 48586278 48586278 A -> T 13.661144950298
418 ERBB2 chr17 37881117 37881117 C -> T 13.554840453543
419 TP53 chr17 7577562 7577562 C -> T 13.544972201121
420 EGFR chr7 55221843 55221843 C -> T 13.521773069807
421 VHL chr3 10188255 10188255 C -> T 13.452247911006
422 MLH1 chr3 37067252 37067252 C -> T 13.441107388024
423 MLH1 chr3 37067285 37067285 C -> T 13.441107388024
426 BRAF chr7 140453185 140453185 G -> T 13.311874059196
427 KIT chr4 55593673 55593673 A -> T 13.143768903471
428 EGFR chr7 55242494 55242494 C -> T 13.143768903471
429 TP53 chr17 7574023 7574023 C -> T 13.143768903471
430 EGFR chr7 55249017 55249017 C -> T 13.055488239653
431 PDGFRA chr4 55144607 55144607 T -> C 12.916116359162
433 STK11 chr19 1220578 1220578 A -> G 12.836054190337
434 ERBB2 chr17 37880237 37880237 C -> T 12.798524538977
435 KIT chr4 55593672 55593672 C -> T 12.758238301402
436 EGFR chr7 55249131 55249131 G -> A 12.679322574181
437 ERBB4 chr2 212530132 212530132 C -> T 12.630997264385
438 MLH1 chr3 37067284 37067284 C -> T 12.611959809299
439 GNAQ chr9 80412436 80412436 C -> T 12.611959809299
440 KRAS chr12 25378630 25378630 C -> T 12.522528043546
441 ABL1 chr9 133750355 133750355 C -> T 12.515621431934
442 ERBB4 chr2 212652774 212652774 C -> T 12.487552253969
443 SMAD4 chr18 48586269 48586269 C -> T 12.487552253969
444 TP53 chr17 7578503 7578503 C -> T 12.464353122655
446 EGFR chr7 55249110 55249110 G -> A 12.402813442261
447 RB1 chr13 49033875 49033875 C -> T 12.402813442261
448 PTPN11 chr12 112888208 112888208 C -> T 12.399581502211
449 KDR chr4 55955124 55955124 C -> T 12.34950856802
450 HNF1A chr12 121431418 121431418 C -> T 12.34950856802
451 FLT3 chr13 28608258 28608258 C -> T 12.34950856802
452 SMO chr7 128846073 128846073 C -> T 12.318074630552
453 TP53 chr17 7578555 7578555 C -> T 12.157659022169
454 ERBB2 chr17 37881009 37881009 C -> T 12.145388368744
456 TP53 chr17 7578370 7578370 C -> T 12.135662256439
457 ERBB4 chr2 212812187 212812187 C -> T 11.964420697465
458 KIT chr4 55593398 55593398 C -> T 11.964420697465
460 PTPN11 chr12 112888237 112888237 C -> T 11.878220871762
461 PDGFRA chr4 55152120 55152120 C -> T 11.779226105314
462 FGFR3 chr4 1808349 1808349 C -> T 11.775870666474
463 ERBB4 chr2 212587184 212587184 A -> G 11.741815292413
464 ERBB4 chr2 212587235 212587235 C -> T 11.741815292413
465 ERBB4 chr2 212589824 212589824 C -> T 11.741815292413
466 ERBB4 chr2 212812259 212812259 C -> T 11.741815292413
467 FBXW7 chr4 153245500 153245500 C -> T 11.741815292413
468 FBXW7 chr4 153250903 153250903 C -> T 11.741815292413
469 EGFR chr7 55221842 55221842 C -> T 11.741815292413
470 MET chr7 116423513 116423513 A -> G 11.741815292413
471 EGFR chr7 55249130 55249130 G -> A 11.45366465185
473 ERBB4 chr2 212812173 212812173 C -> T 11.258263933227
474 ERBB2 chr17 37881440 37881440 C -> T 11.228221104778
475 GNA11 chr19 3118923 3118923 A -> G 11.224881977099
476 BRAF chr7 140453140 140453140 T -> C 10.839218555577
477 KDR chr4 55961014 55961014 C -> T 10.78896852878
478 SMAD4 chr18 48604709 48604709 C -> T 10.73893986774
479 SMO chr7 128846402 128846402 T -> C 10.735663654539
480 PIK3CA chr3 178916887 178916887 C -> T 10.692630151414
481 FBXW7 chr4 153245539 153245539 C -> T 10.692630151414
482 FBXW7 chr4 153249445 153249445 C -> T 10.692630151414
483 EGFR chr7 55249092 55249092 G -> A 10.692630151414
484 ABL1 chr9 133748293 133748293 G -> A 10.692630151414
486 NOTCH1 chr9 139399353 139399353 C -> T 10.583806745364
487 GNAQ chr9 80412497 80412497 C -> T 10.468873644426
488 SMAD4 chr18 48586265 48586265 C -> T 10.468873644426
489 KIT chr4 55597538 55597538 C -> T 10.437351160656
490 ERBB2 chr17 37881024 37881024 C -> T 10.320197411652
491 FBXW7 chr4 153259045 153259045 A -> T 10.214745755603
492 BRAF chr7 140453119 140453119 C -> T 10.21107108404
493 ABL1 chr9 133750359 133750359 C -> T 10.21107108404
495 GNAQ chr9 80336402 80336402 C -> T 10.120753855259
496 FBXW7 chr4 153249414 153249414 T -> C 9.6901531851037
497 HRAS chr11 533904 533904 C -> T 9.6901531851037
498 FGFR3 chr4 1803604 1803604 C -> T 9.6279051342875
501 ATM chr11 108180964 108180964 C -> T 9.5199229181133
502 EGFR chr7 55249016 55249016 C -> T 9.4217250683904
503 GNAQ chr9 80336342 80336342 G -> A 9.4217250683904
504 KDR chr4 55953916 55953916 C -> T 9.3818792321637
505 ERBB2 chr17 37881063 37881063 A -> G 9.3262325412323
506 NRAS chr1 115256559 115256559 C -> T 9.3197640008016
507 BRAF chr7 140481463 140481463 C -> T 9.2870461419444
508 GNA11 chr19 3119333 3119333 G -> A 9.1729099577308
509 FGFR2 chr10 123274803 123274803 G -> T 9.1694566519245
510 PIK3CA chr3 178916902 178916902 C -> T 9.0774570433923
513 SMARCB1 chr22 24134043 24134043 C -> T 9.0296863130718
515 BRAF chr7 140453179 140453179 C -> T 8.9854131617089
516 VHL chr3 10188273 10188273 C -> T 8.9456418907898
517 ERBB4 chr2 212589845 212589845 C -> T 8.8552500967019
518 ERBB2 chr17 37881380 37881380 C -> T 8.8292501060225
521 TP53 chr17 7577599 7577599 C -> T 8.5946140546284
522 PIK3CA chr3 178936076 178936076 C -> T 8.3731597515111
523 EGFR chr7 55249081 55249081 G -> A 8.372539927392
524 ERBB4 chr2 212530124 212530124 C -> T 8.3306575262027
525 ATM chr11 108180985 108180985 C -> T 8.3306575262027
528 GNAQ chr9 80336274 80336274 G -> A 8.1960671460595
529 ATM chr11 108180975 108180975 C -> T 8.0177348923696
530 STK11 chr19 1221339 1221339 G -> A 7.9326861686015
531 HRAS chr11 534320 534320 C -> T 7.9239527069537
532 SMAD4 chr18 48586277 48586277 A -> G 7.8863321791245
534 BRAF chr7 140481444 140481444 C -> T 7.7125157868737
535 NRAS chr1 115258779 115258779 C -> T 7.6252347642105
536 NPM1 chr5 170837556 170837556 G -> T 7.4823839460893
537 EGFR chr7 55259554 55259554 C -> T 7.3219823187014
538 CDH1 chr16 68847391 68847391 C -> T 7.2814723852044
539 FGFR3 chr4 1803672 1803672 C -> T 7.2432203824268
541 EGFR chr7 55249112 55249112 G -> A 7.2279461452066
542 IDH1 chr2 209113165 209113165 G -> C 7.1976633096744
543 CDH1 chr16 68847295 68847295 C -> T 7.1918192536945
544 GNAQ chr9 80336294 80336294 G -> A 7.0577158782162
545 ERBB4 chr2 212812224 212812224 C -> T 6.9685497513713
546 FBXW7 chr4 153249456 153249456 C -> T 6.8035879893931
547 FBXW7 chr4 153247351 153247351 C -> T 6.7568798147052
548 ABL1 chr9 133747553 133747553 C -> T 6.7568798147052
549 ERBB4 chr2 212587175 212587175 C -> T 6.5731905097005
550 ATM chr11 108206648 108206648 C -> T 6.5547728787335
551 KDR chr4 55946251 55946251 G -> A 6.4603825200278
552 RB1 chr13 48919265 48919265 G -> T 6.4603825200278
553 PTEN chr10 89717673 89717673 G -> A 6.4495798710952
554 ATM chr11 108180958 108180958 C -> T 6.4386001295572
555 EGFR chr7 55211125 55211125 C -> T 6.4092027570522
556 PIK3CA chr3 178936080 178936080 C -> T 6.3950353486161
558 GNA11 chr19 3119336 3119336 G -> A 6.3553666049949
559 EGFR chr7 55248990 55248990 C -> T 6.2789954188939
560 CDH1 chr16 68847364 68847364 C -> T 6.189342287384
561 ATM chr11 108170473 108170473 C -> T 6.0953061138892
562 SMAD4 chr18 48581238 48581238 C -> T 6.0953061138892
563 ERBB2 chr17 37881069 37881069 C -> T 6.0946093942967
564 EGFR chr7 55241681 55241681 C -> T 6.0105673021806
565 PTPN11 chr12 112926948 112926948 A -> G 6.0105673021806
566 PTPN11 chr12 112926951 112926951 C -> T 6.0105673021806
567 KDR chr4 55953820 55953820 C -> T 5.9824981242165
568 KDR chr4 55953874 55953874 C -> T 5.8861597468508
569 JAK3 chr19 17945804 17945804 C -> T 5.7481160609012
570 BRAF chr7 140481423 140481423 C -> T 5.5742553954991
571 FGFR1 chr8 38285951 38285951 C -> T 5.4946079961972
572 GNAQ chr9 80336409 80336409 C -> T 5.2777581008216
573 EGFR chr7 55233111 55233111 C -> T 5.2702316650899
574 FLT3 chr13 28592675 28592675 C -> T 5.1834562884186
575 TP53 chr17 7578371 7578371 C -> T 5.1737161951188
576 ERBB4 chr2 212576880 212576880 C -> T 5.0461209728908
577 EGFR chr7 55242479 55242479 C -> T 5.0340786757201
578 MET chr7 116339749 116339749 C -> T 4.9706795229684
579 EGFR chr7 55249121 55249121 G -> A 4.8680100849578
580 EGFR chr7 55221845 55221845 C -> T 4.861679024313
581 SMARCB1 chr22 24134070 24134070 C -> T 4.8514612470116
582 ERBB4 chr2 212288955 212288955 C -> T 4.8383028003933
583 HRAS chr11 534298 534298 C -> T 4.7947380194522
584 HNF1A chr12 121432118 121432118 C -> T 4.7941624684845
585 FGFR2 chr10 123279555 123279555 G -> A 4.7869459448124
587 ABL1 chr9 133747522 133747522 A -> T 4.6454046799051
588 PDGFRA chr4 55144645 55144645 A -> T 4.562923798916
589 KIT chr4 55597549 55597549 C -> T 4.5247603424412
590 ERBB2 chr17 37881075 37881075 C -> T 4.4772878733508
591 ERBB2 chr17 37881374 37881374 C -> T 4.4772878733508
592 FBXW7 chr4 153250916 153250916 G -> A 4.4367895906831
593 HRAS chr11 533911 533911 C -> T 4.4367895906831
594 STK11 chr19 1221270 1221270 G -> A 4.4367895906831
595 PIK3CA chr3 178952045 178952045 G -> A 4.341380949496
596 EGFR chr7 55249058 55249058 G -> A 4.3123820353533
598 GNAQ chr9 80412539 80412539 C -> T 4.2285729598233
599 ATM chr11 108206672 108206672 C -> T 4.2210465240916
600 RB1 chr13 48923154 48923154 C -> T 4.1286927303485
601 CDH1 chr16 68846159 68846159 C -> T 4.0515689006743
602 ATM chr11 108172511 108172511 A -> G 4.0439539186399
603 NPM1 chr5 170837562 170837562 C -> T 3.9366357997362
604 FGFR3 chr4 1803570 1803570 C -> T 3.7814141310578
606 EGFR chr7 55233124 55233124 C -> T 3.7357242388513
607 KRAS chr12 25378679 25378679 C -> T 3.7357242388513
608 PIK3CA chr3 178936089 178936089 C -> T 3.7201400895716
610 FLT3 chr13 28592690 28592690 C -> T 3.6844116564217
611 MET chr7 116412032 116412032 C -> T 3.6183118414369
612 ATM chr11 108170503 108170503 C -> T 3.5127646485877
613 ATM chr11 108172506 108172506 C -> T 3.4280258368791
614 BRAF chr7 140481448 140481448 C -> T 3.4259892719164
615 FGFR1 chr8 38285954 38285954 C -> T 3.3706781248689
616 KRAS chr12 25380313 25380313 C -> T 3.2111316683522
617 KRAS chr12 25378646 25378646 A -> T 3.1576497015058
618 PIK3CA chr3 178938859 178938859 C -> T 3.0795075893502
619 ATM chr11 108119826 108119826 C -> T 3.0777366632957
620 FLT3 chr13 28608267 28608267 A -> G 3.0352344379873
621 BRAF chr7 140481484 140481484 C -> T 3.0274423633474
622 FBXW7 chr4 153250919 153250919 C -> T 2.9414639034006
623 SMARCB1 chr22 24134076 24134076 C -> T 2.9380222484236
625 PTPN11 chr12 112888256 112888256 A -> G 2.9013967014172
627 ALK chr2 29443702 29443702 C -> T 2.8360541903373
628 ERBB4 chr2 212289027 212289027 C -> T 2.8360541903373
629 ERBB4 chr2 212652749 212652749 C -> T 2.8360541903373
630 KDR chr4 55955141 55955141 C -> T 2.8360541903373
631 KDR chr4 55962510 55962510 C -> T 2.8360541903373
632 FBXW7 chr4 153250938 153250938 C -> T 2.8360541903373
633 CSF1R chr5 149453057 149453057 C -> T 2.8360541903373
634 GNAQ chr9 80343584 80343584 C -> T 2.8360541903373
635 GNAQ chr9 80343585 80343585 T -> C 2.8360541903373
636 FGFR2 chr10 123258120 123258120 C -> T 2.8360541903373
637 KRAS chr12 25380347 25380347 C -> T 2.8360541903373
638 FLT3 chr13 28602426 28602426 C -> T 2.8360541903373
639 FLT3 chr13 28608352 28608352 C -> T 2.8360541903373
640 STK11 chr19 1221340 1221340 G -> A 2.8360541903373
641 SMAD4 chr18 48581225 48581225 C -> T 2.818295996309
642 ERBB4 chr2 212578362 212578362 C -> T 2.7323175363622
643 KIT chr4 55593402 55593402 C -> T 2.6709549485732
644 EGFR chr7 55241717 55241717 C -> T 2.5459275691244
646 CTNNB1 chr3 41266109 41266109 C -> T 2.3788406958807
647 HRAS chr11 533917 533917 C -> T 2.3788406958807
648 ABL1 chr9 133738328 133738328 C -> T 2.3747675659553
650 NOTCH1 chr9 139399348 139399348 C -> T 2.2687776415925
651 SMO chr7 128845162 128845162 A -> G 2.2023679145482
652 HRAS chr11 533945 533945 C -> T 2.1576590221692
653 STK11 chr19 1207135 1207135 A -> G 2.14720356795
654 GNAQ chr9 80336264 80336264 T -> C 2.0318277354982
655 FBXW7 chr4 153259073 153259073 C -> T 1.9782572223491
656 JAK3 chr19 17945723 17945723 C -> T 1.9369946452789
657 CDH1 chr16 68847301 68847301 C -> T 1.9102536618557
658 EGFR chr7 55259533 55259533 C -> T 1.8932527717323
659 KDR chr4 55960989 55960989 C -> T 1.845880499774
660 MET chr7 116412029 116412029 C -> T 1.845880499774
661 RB1 chr13 49033854 49033854 C -> T 1.8148007475172
662 KDR chr4 55980415 55980415 C -> T 1.8031126355574
663 SMAD4 chr18 48584597 48584597 C -> T 1.7691108553107
665 GNAQ chr9 80343433 80343433 C -> T 1.6460314945218
667 HNF1A chr12 121432106 121432106 A -> T 1.6017583431589
668 FBXW7 chr4 153247361 153247361 C -> T 1.4536646518499
669 EGFR chr7 55242418 55242418 C -> T 1.4536646518499
670 JAK3 chr19 17945789 17945789 C -> T 1.4216108902632
671 KDR chr4 55980385 55980385 G -> T 1.2838771163731
672 TP53 chr17 7578531 7578531 C -> T 1.2820619171673
673 PIK3CA chr3 178952065 178952065 G -> A 1.2445182848115
674 ERBB4 chr2 212530097 212530097 C -> T 1.2373017611394
675 PIK3CA chr3 178952004 178952004 C -> T 1.2373017611394
676 KDR chr4 55953892 55953892 C -> T 1.2373017611394
677 GNA11 chr19 3115042 3115042 C -> T 1.1602664777679
678 TP53 chr17 7578380 7578380 C -> T 1.1151964096804
679 EGFR chr7 55211163 55211163 C -> T 1.0628655447695
680 EGFR chr7 55233064 55233064 C -> T 1.0608289798068
681 ERBB4 chr2 212587251 212587251 C -> T 1.0178840229848
682 PDGFRA chr4 55144619 55144619 C -> T 1.0171756525629
683 MET chr7 116340289 116340289 G -> C 0.86797513246993
684 ERBB4 chr2 212587232 212587232 C -> T 0.84774230229708
685 FGFR3 chr4 1808981 1808981 C -> T 0.6926045195897
686 PIK3CA chr3 178936118 178936118 C -> T 0.64594527838492
687 HNF1A chr12 121432137 121432137 C -> T 0.6393928519832
688 EGFR chr7 55249100 55249100 G -> A 0.62859020305065
689 AKT1 chr14 105246506 105246506 C -> T 0.6213736793785
691 SMAD4 chr18 48581249 48581249 C -> T 0.57931418558373
692 FLT3 chr13 28602354 28602354 C -> T 0.49329145248559
693 ERBB4 chr2 212589862 212589862 C -> T 0.45025794936084
695 PDGFRA chr4 55144633 55144633 A -> G 0.23323096137983
696 RB1 chr13 49027219 49027219 C -> T 0.095762826397984
697 PIK3CA chr3 178928026 178928026 C -> T 0.011643838808447
698 PIK3CA chr3 178938887 178938887 A -> G 0.011643838808447
699 KIT chr4 55592196 55592196 C -> T 0.011643838808447
700 FBXW7 chr4 153247337 153247337 C -> T 0.011643838808447
701 FBXW7 chr4 153259034 153259034 C -> T 0.011643838808447
702 EGFR chr7 55221825 55221825 C -> T 0.011643838808447
703 BRAF chr7 140481480 140481480 C -> T 0.011643838808447
704 HRAS chr11 534292 534292 C -> T 0.011643838808447
705 STK11 chr19 1221272 1221272 G -> T -0.16567013240002
706 FLT3 chr13 28592618 28592618 C -> T -0.20777389934615
707 MET chr7 116339698 116339698 C -> T -0.27489199681233
708 HNF1A chr12 121432131 121432131 C -> T -0.31230280971399
709 EGFR chr7 55233102 55233102 C -> T -0.32022770380796
711 ERBB4 chr2 212576866 212576866 C -> T -0.46987095541461
712 PIK3CA chr3 178928047 178928047 C -> T -0.46987095541461
714 FGFR2 chr10 123279627 123279627 C -> T -0.48740312335432
715 FBXW7 chr4 153247301 153247301 C -> T -0.51294873169072
716 ABL1 chr9 133748295 133748295 C -> A -0.51294873169072
717 AKT1 chr14 105246478 105246478 C -> T -0.51294873169072
718 SMAD4 chr18 48581277 48581277 C -> T -0.51294873169072
719 STK11 chr19 1221312 1221312 G -> A -0.51294873169072
721 GNA11 chr19 3121037 3121037 G -> A -0.67866313724211
723 JAK3 chr19 17945717 17945717 C -> T -0.68421825265522
724 CDH1 chr16 68847288 68847288 C -> T -0.69026270289919
725 GNAQ chr9 80412491 80412491 C -> T -0.71709223262512
726 SMO chr7 128846041 128846041 C -> T -0.73236646984532
727 TP53 chr17 7577069 7577069 C -> T -0.78704381177852
728 ATM chr11 108236212 108236212 C -> T -1.1288768134516
729 ERBB4 chr2 212576854 212576854 C -> T -1.2569147671931
730 ERBB4 chr2 212530136 212530136 C -> T -1.3452397041621
731 MET chr7 116412037 116412037 C -> T -1.3452397041621
732 ATM chr11 108155133 108155133 C -> T -1.3754339933916
733 GNAQ chr9 80409504 80409504 C -> T -1.5217124854947
734 ATM chr11 108173695 108173695 C -> T -1.5217124854947
735 ATM chr11 108180997 108180997 C -> T -1.5217124854947
736 AKT1 chr14 105246464 105246464 C -> T -1.5217124854947
737 EGFR chr7 55249019 55249019 C -> T -1.5995446855907
738 TP53 chr17 7578422 7578422 T -> C -1.6654231348187
740 SMAD4 chr18 48581229 48581229 C -> T -1.6849033214184
741 CDH1 chr16 68846144 68846144 C -> T -1.7271399078186
743 GNAQ chr9 80412473 80412473 T -> C -2.0320048281037
744 PIK3CA chr3 178952054 178952054 G -> A -2.2201214482447
746 RB1 chr13 48942727 48942727 C -> T -2.4099647212889
747 FGFR3 chr4 1808961 1808961 C -> T -2.4160301430256
748 PIK3CA chr3 178952030 178952030 G -> A -2.5565973986028
749 KDR chr4 55953830 55953830 C -> T -2.5708976264931
750 BRAF chr7 140481466 140481466 C -> T -2.5708976264931
751 FGFR2 chr10 123274798 123274798 C -> T -2.5708976264931
752 MET chr7 116339644 116339644 C -> T -2.7627774644999
753 SMARCB1 chr22 24143288 24143288 C -> T -2.7654688060696
754 CSF1R chr5 149433708 149433708 C -> T -2.8186501815199
755 KIT chr4 55595614 55595614 C -> T -3.041786864389
756 KIT chr4 55595632 55595632 C -> T -3.041786864389
757 FBXW7 chr4 153259022 153259022 C -> T -3.0954901969922
758 EGFR chr7 55211164 55211164 C -> T -3.0954901969922
759 ATM chr11 108206671 108206671 A -> T -3.0954901969922
760 KRAS chr12 25378673 25378673 C -> T -3.0954901969922
761 KRAS chr12 25378676 25378676 C -> T -3.0954901969922
762 HNF1A chr12 121432152 121432152 C -> T -3.4653923766294
763 ERBB4 chr2 212530121 212530121 C -> T -3.5155095839722
764 JAK3 chr19 17945744 17945744 C -> T -3.5155095839722
765 FGFR3 chr4 1808960 1808960 C -> T -3.523655843823
766 FGFR3 chr4 1808958 1808958 C -> T -3.5976176384235
767 KIT chr4 55561810 55561810 C -> T -3.6037902477898
768 JAK3 chr19 17945811 17945811 C -> T -3.7391775446576
769 CDH1 chr16 68835672 68835672 C -> T -3.8024881511066
771 FGFR3 chr4 1806204 1806204 C -> T -3.8537797620435
772 MLH1 chr3 37067348 37067348 C -> T -3.8847476663389
773 KRAS chr12 25378620 25378620 G -> C -3.8897505324429
774 AKT1 chr14 105246455 105246455 C -> T -3.8897505324429
775 HNF1A chr12 121432130 121432130 C -> T -3.9899849471285
776 FBXW7 chr4 153249486 153249486 T -> C -4.0443523770022
777 MLH1 chr3 37067312 37067312 C -> T -4.0751222171994
778 GNAQ chr9 80336254 80336254 C -> A -4.167785923002
779 FGFR3 chr4 1806182 1806182 C -> T -4.2637701151568
780 GNA11 chr19 3114977 3114977 G -> A -4.2637701151568
781 SMAD4 chr18 48581292 48581292 C -> T -4.2674447867199
783 ATM chr11 108172503 108172503 C -> T -4.3362452639379
784 EGFR chr7 55259550 55259550 C -> T -4.4314768125195
787 CSF1R chr5 149433718 149433718 C -> T -4.552918066708
788 TP53 chr17 7578484 7578484 G -> A -4.6409330916175
789 SMO chr7 128846124 128846124 C -> T -4.6636009451153
790 KRAS chr12 25378591 25378591 C -> T -4.7920373572191
791 CTNNB1 chr3 41266037 41266037 A -> C -4.8694268258015
793 SMARCB1 chr22 24143307 24143307 C -> T -5.0937332519329
796 ERBB4 chr2 212652780 212652780 T -> C -5.3503660690568
797 PDGFRA chr4 55144615 55144615 C -> T -5.4171742544634
798 KDR chr4 55946152 55946152 G -> A -5.6144111437852
799 TP53 chr17 7577595 7577595 C -> T -5.7033559048733
800 KDR chr4 55961080 55961080 C -> T -5.7514808204048
801 EGFR chr7 55249106 55249106 G -> A -5.8057154308244
802 KIT chr4 55592181 55592181 C -> T -5.8786333111191
803 KDR chr4 55946213 55946213 C -> A -5.8786333111191
804 ERBB4 chr2 212576870 212576870 C -> T -6.2654478345769
806 ATM chr11 108123611 108123611 A -> G -6.3134842038056
807 CSF1R chr5 149433730 149433730 C -> T -6.3394282705043
809 TP53 chr17 7577033 7577033 C -> T -6.8393606956943
810 FGFR3 chr4 1806156 1806156 C -> T -6.9813889652665
811 PDGFRA chr4 55144628 55144628 C -> T -7.2123619959269
813 CDH1 chr16 68847331 68847331 A -> G -7.2753184171649
818 FGFR1 chr8 38285956 38285956 A -> G -7.6270522935823
819 FGFR2 chr10 123274814 123274814 C -> G -7.7028642398766
820 KDR chr4 55980405 55980405 C -> T -7.7134897962037
821 EGFR chr7 55211116 55211116 C -> T -7.9288786775843
822 ATM chr11 108172464 108172464 C -> T -7.9338815436883
823 ATM chr11 108123606 108123606 C -> T -8.0684719238315
824 TP53 chr17 7579437 7579437 C -> T -8.1960671460595
825 STK11 chr19 1223120 1223120 C -> T -8.2515856778686
826 CDH1 chr16 68835683 68835683 C -> T -8.4130941340405
827 GNA11 chr19 3114971 3114971 C -> T -8.5428144675338
828 ERBB2 chr17 37881096 37881096 C -> T -8.6081266864575
830 HNF1A chr12 121432121 121432121 C -> T -8.8373637435513
832 CSF1R chr5 149433681 149433681 C -> T -9.0592165050308
833 ATM chr11 108170507 108170507 G -> T -9.1176570648299
834 MLH1 chr3 37067303 37067303 C -> T -9.203192793263
835 EGFR chr7 55211104 55211104 C -> T -9.2421974396138
836 SMARCB1 chr22 24143310 24143310 C -> T -9.3426042865731
837 MLH1 chr3 37067311 37067311 C -> T -9.3639928790131
838 EGFR chr7 55233115 55233115 C -> T -9.469628618165
839 KIT chr4 55595603 55595603 C -> T -9.642249635329
840 CSF1R chr5 149433709 149433709 T -> C -9.7114928440606
841 ATM chr11 108137992 108137992 C -> T -9.7290692851517
842 ATM chr11 108170519 108170519 C -> T -9.7290692851517
843 TP53 chr17 7577060 7577060 C -> T -10.078384449405
844 EGFR chr7 55233093 55233093 C -> T -10.684218252655
846 ATM chr11 108123632 108123632 C -> T -10.77825442615
847 AKT1 chr14 105246467 105246467 C -> T -10.87636372957
848 KDR chr4 55946146 55946146 G -> A -10.883447433788
849 FLT3 chr13 28592632 28592632 C -> T -10.968141972346
850 CSF1R chr5 149433762 149433762 C -> T -11.023704777306
851 CDH1 chr16 68847394 68847394 C -> T -11.04105985264
852 CSF1R chr5 149433724 149433724 C -> T -11.259769220373
853 MET chr7 116339695 116339695 C -> T -11.427874376098
854 EGFR chr7 55211146 55211146 C -> T -11.517527507608
855 ATM chr11 108172467 108172467 C -> T -11.553300213909
856 CDH1 chr16 68835677 68835677 C -> T -11.690325617377
857 TP53 chr17 7577046 7577046 C -> T -11.741815292413
858 TP53 chr17 7579431 7579431 C -> T -12.266407862912
859 PDGFRA chr4 55144627 55144627 C -> T -12.354954165638
862 KIT chr4 55595645 55595645 C -> T -12.485427142704
863 SMARCB1 chr22 24143309 24143309 G -> A -12.528742595898
864 JAK3 chr19 17945768 17945768 C -> T -12.604433373568
865 JAK3 chr19 17945752 17945752 C -> T -12.634893301705
866 KDR chr4 55946113 55946113 C -> T -12.649060710141
867 CDH1 chr16 68847369 68847369 A -> G -12.868655540901
868 KDR chr4 55961071 55961071 C -> T -13.068460273002
869 KIT chr4 55561792 55561792 C -> T -14.006475530928
871 EGFR chr7 55211137 55211137 C -> T -14.265916197915
872 RB1 chr13 48919220 48919220 C -> T -14.80467617685
873 KIT chr4 55561879 55561879 C -> T -15.078328525424
875 FLT3 chr13 28610150 28610150 G -> A -15.973088914469
876 EGFR chr7 55233114 55233114 C -> T -16.075271347815
877 KDR chr4 55946124 55946124 C -> T -16.497681484968
878 CSF1R chr5 149433751 149433751 C -> T -16.498441119039
879 ATM chr11 108138064 108138064 C -> T -16.599863918314
880 ATM chr11 108170533 108170533 C -> T -16.599863918314
881 CDH1 chr16 68835689 68835689 C -> T -16.689517049824
882 ATM chr11 108138045 108138045 C -> T -24.80467617685
20 RB1 chr13 49027168 49027168 C -> T 81.538175107304
21 VHL chr3 10191590 10191590 C -> T 79.566267586927
22 APC chr5 112175390 112175390 C -> T 73.592374765236
23 APC chr5 112175576 112175576 C -> T 73.592374765236
36 RET chr10 43613877 43613877 C -> T 63.94134040461
56 APC chr5 112175621 112175621 C -> T 63.592374765236
81 APC chr5 112175951 112175951 - -> A 60
94 RET chr10 43613852 43613852 G -> - 60
95 RET chr10 43615656 43615656 C -> T 60
96 RET chr10 43615657 43615657 C -> T 60
143 SMAD4 chr18 48591918 48591918 C -> T 39
153 RET chr10 43615632 43615632 C -> T 36.689517049824
154 VHL chr3 10191506 10191506 C -> T 36.127513666423
157 PTEN chr10 89711987 89711987 C -> T 35.98123517432
159 RET chr10 43609937 43609937 G -> A 33.712147620668
211 SMAD4 chr18 48575194 48575194 C -> T 18.263294761321
212 SMAD4 chr18 48575200 48575200 C -> T 18.263294761321
213 SMAD4 chr18 48604743 48604743 C -> T 18.263294761321
216 RET chr10 43617419 43617419 C -> T 17.78541036551
219 VHL chr3 10191521 10191521 C -> T 17.738702190822
229 APC chr5 112175771 112175771 G -> A 17.738702190822
230 APC chr5 112175867 112175867 C -> T 17.738702190822
241 RET chr10 43615593 43615593 C -> T 17.738702190822
242 RET chr10 43615608 43615608 C -> T 17.738702190822
273 PTEN chr10 89711951 89711951 C -> T 17.260817795011
275 PTEN chr10 89717654 89717654 T -> C 17.260817795011
276 PTEN chr10 89717741 89717741 G -> A 17.260817795011
278 SMAD4 chr18 48591865 48591865 C -> T 17.260817795011
288 SMAD4 chr18 48593508 48593508 G -> A 16.852265154234
291 APC chr5 112175432 112175432 C -> T 16.689517049824
292 APC chr5 112175537 112175537 G -> A 16.689517049824
293 APC chr5 112175561 112175561 C -> T 16.689517049824
294 APC chr5 112175562 112175562 C -> T 16.689517049824
295 APC chr5 112175778 112175778 C -> T 16.689517049824
315 RET chr10 43613919 43613919 A -> T 16.211632654012
316 RET chr10 43615577 43615577 C -> T 16.164924479324
323 SMAD4 chr18 48586283 48586283 C -> T 15.98123517432
324 VHL chr3 10188318 10188318 C -> T 15.972601909804
336 RET chr10 43613892 43613892 C -> T 15.803080013235
340 RB1 chr13 49027147 49027147 C -> T 15.772088807281
394 VHL chr3 10191557 10191557 C -> T 14.464082823415
396 SMAD4 chr18 48591861 48591861 C -> T 14.45416563751
404 APC chr5 112174734 112174734 C -> T 14.245019270472
417 SMAD4 chr18 48593511 48593511 C -> T 13.661144950298
424 APC chr5 112175115 112175115 G -> A 13.398693709018
425 VHL chr3 10188294 10188294 C -> T 13.371381834959
432 APC chr5 112175822 112175822 C -> T 12.836070501498
445 VHL chr3 10183815 10183815 C -> T 12.434424472334
455 APC chr5 112176002 112176002 G -> A 12.140362200981
459 APC chr5 112174709 112174709 C -> T 11.878220871762
472 APC chr5 112175370 112175370 C -> T 11.311745900073
485 PTEN chr10 89711968 89711968 C -> T 10.663321325212
494 APC chr5 112175909 112175909 G -> A 10.125579628758
499 APC chr5 112175361 112175361 G -> A 9.5542788835709
500 APC chr5 112175714 112175714 G -> A 9.5542788835709
511 APC chr5 112175147 112175147 G -> A 9.0763944877596
512 APC chr5 112175283 112175283 G -> A 9.0763944877596
514 APC chr5 112175141 112175141 G -> A 8.991655676051
519 APC chr5 112174023 112174023 A -> T 8.8151828947184
520 APC chr5 112175615 112175615 C -> T 8.7292044347717
526 RET chr10 43609957 43609957 G -> A 8.2520284093822
527 PTEN chr10 89717648 89717648 T -> A 8.2494605666031
533 APC chr5 112174674 112174674 C -> T 7.7659977537201
540 APC chr5 112175903 112175903 G -> A 7.2341886595488
557 APC chr5 112175459 112175459 G -> A 6.3660807076248
586 RET chr10 43609094 43609094 A -> G 4.6945921510693
597 APC chr5 112175154 112175154 G -> A 4.2285729598233
605 APC chr5 112175607 112175607 C -> T 3.7589233701655
609 STK11 chr19 1223169 1223169 C -> T 3.7201400895716
624 APC chr5 112175504 112175504 G -> A 2.9157412024588
626 APC chr5 112175732 112175732 G -> A 2.8716894168527
645 APC chr5 112175799 112175799 C -> T 2.4701762071424
649 APC chr5 112175687 112175687 G -> A 2.2842732445696
664 APC chr5 112175744 112175744 G -> A 1.6460314945218
666 PTEN chr10 89624247 89624247 G -> T 1.6017583431589
690 STK11 chr19 1223168 1223168 C -> T 0.58993974191083
694 RET chr10 43609939 43609939 G -> A 0.44861984276041
710 SMAD4 chr18 48581261 48581261 C -> T -0.45924539908751
713 RB1 chr13 48919275 48919275 C -> T -0.47358990012909
720 STK11 chr19 1223151 1223151 C -> T -0.64634373674718
722 APC chr5 112174659 112174659 A -> G -0.68025697069117
739 SMAD4 chr18 48581208 48581208 C -> T -1.6849033214184
742 APC chr5 112175618 112175618 C -> T -1.8189624237453
745 STK11 chr19 1223096 1223096 C -> T -2.2773666329569
770 RB1 chr13 49027207 49027207 C -> T -3.8173196568132
782 RET chr10 43609081 43609081 C -> T -4.3136659567428
785 RET chr10 43609082 43609082 C -> T -4.4901387380754
786 RET chr10 43609972 43609972 G -> A -4.4933264049735
792 APC chr5 112175249 112175249 G -> A -5.0556839735852
794 APC chr5 112175679 112175679 G -> A -5.1931078354157
795 APC chr5 112175205 112175205 C -> T -5.2019624656883
805 TP53 chr17 7579891 7579891 G -> C -6.2727086314004
808 SMAD4 chr18 48581265 48581265 C -> T -6.6162682859766
812 APC chr5 112175649 112175649 C -> T -7.2405197201937
814 APC chr5 112175174 112175174 G -> A -7.3377435605866
815 APC chr5 112175307 112175307 G -> A -7.4337277527414
816 APC chr5 112175705 112175705 G -> A -7.5715057997828
817 PTEN chr10 89717687 89717687 T -> C -7.5715057997828
829 RET chr10 43610008 43610008 G -> A -8.7373064214711
831 APC chr5 112175306 112175306 G -> A -9.0449162771406
845 APC chr5 112175634 112175634 C -> T -10.76395419826
860 APC chr5 112175267 112175267 G -> A -12.471126914814
861 APC chr5 112175648 112175648 C -> T -12.471126914814
870 APC chr5 112175264 112175264 G -> A -14.236740191167
874 APC chr5 112175246 112175246 C -> T -15.900171034174
7 RET chr10 43615610 43615610 C -> T 83.94134040461
11 SMAD4 chr18 48586262 48586262 C -> T 83.94134040461
14 VHL chr3 10191497 10191497 C -> T 83.592374765236
16 SMAD4 chr18 48604778 48604778 C -> T 83.592374765236
2 GNAQ chr9 80343425 80343425 C -> T 240
3 FGFR2 chr10 123279488 123279488 C -> T 240
4 ABL1 chr9 133748242 133748242 G -> A 150
5 ABL1 chr9 133748243 133748243 G -> A 120
6 HRAS chr11 534379 534379 C -> T 90
8 ATM chr11 108117852 108117852 C -> T 83.94134040461
9 ATM chr11 108170500 108170500 C -> T 83.94134040461
10 RB1 chr13 49033916 49033916 C -> T 83.94134040461
12 SMAD4 chr18 48591933 48591933 C -> T 83.94134040461
13 SMAD4 chr18 48603041 48603041 C -> T 83.94134040461
15 ATM chr11 108205825 108205825 C -> T 83.592374765236

Databases in this calculation

Name Databases
info
  • intervar
  • clinvar
prediction
  • revel
  • sift
  • polyphen2_hdiv
  • polyphen2_hvar
  • mutation_taster
  • mutation_assessor
  • vest3
  • lrt
  • metasvm
  • metalr
  • cadd
  • dann
  • fathmm_mkl
  • gerp
  • fathmm
  • provean
  • phastcons20way
  • phastcons100way
  • siphy
  • cadd_raw
filter
  • func_refgene
  • exonic_refgene
  • gene_refgene
  • aachange
  • zygosity
cancer_somatic
  • cosmic84
  • nci60
filter_score
  • exonic_refgene_score
  • regsnpintron_disease
  • regsnpintron_splicing_site
  • dbsc_snv_ada
  • dbsc_snv_rf
population
  • 1000g
  • dbsnp
  • exac
  • esp6500
  • gnomad_exome
  • gnomad_genome

Arguments in this calculation

Group
Order Group Name Description Value
1 filter_score mode Filtering mode of this group 2
Databases
Order Database Name Description Value
1 func_refgene filter_list exonic;splicing;ncRNA_exonic;ncRNA_intronic;ncRNA_splicing;intronic
2 func_refgene mode 0: filtered if in filter_list | 1: filtered if not in filter_list 1
3 exonic_refgene filter_list synonymous SNV;unknown
4 exonic_refgene mode 0: filtered if in filter_list | 1: filtered if not in filter_list 0
5 aachange gene_name_list Gene name that you wish to find (1 line per gene name)
6 aachange refseq_list Refseq accession number that you wish to find (1 line per number)
7 aachange exon_list Exon name that you wish to find (1 line per exon name)
8 aachange coding_ref_list Coding DNA reference sequence that you wish to find (1 line per refseq)
9 aachange protein_ref_list Protein reference sequence that you wish to find (1 line per refseq)
10 exonic_refgene_score list Determine which exonic function prefered to be seen first in the report. frameshift insertion;frameshift deletion;frameshift substitution;stopgain;stoploss
11 1000g threshold Specified threshold to distinguish data between common and uncommon (Min: 0 / Max: 1) 0.05
12 exac threshold Specified threshold to distinguish data between common and uncommon (Min: 0 / Max: 1) 0.05
13 esp6500 threshold Specified threshold to distinguish data between common and uncommon (Min: 0 / Max: 1) 0.05
14 gnomad_exome threshold Specified threshold to distinguish data between common and uncommon (Min: 0 / Max: 1) 0.05
15 gnomad_genome threshold Specified threshold to distinguish data between common and uncommon (Min: 0 / Max: 1) 0.05
16 revel weight Weight of this database 1.9262
17 sift weight Weight of this database 0.9924
18 polyphen2_hdiv weight Weight of this database 0.9228
19 polyphen2_hvar weight Weight of this database 1.0794
20 mutation_taster weight Weight of this database 1.664
21 mutation_assessor weight Weight of this database 1.1849
22 vest3 weight Weight of this database 1.4583
23 lrt weight Weight of this database 0.958
24 metasvm weight Weight of this database 1.0051
25 metalr weight Weight of this database 1.0468
26 cadd weight Weight of this database 1.0301
27 dann weight Weight of this database 0.964
28 fathmm_mkl weight Weight of this database 0.921
29 gerp weight Weight of this database 0.997
30 fathmm weight Weight of this database 1.3344
31 provean weight Weight of this database 1.1105
32 phastcons20way weight Weight of this database 0.9393
33 phastcons100way weight Weight of this database 1.0137
34 siphy weight Weight of this database 0.9098
35 regsnpintron_disease disease_mode Mode of scoring 1
36 dbsc_snv_ada threshold_ada Specified threshold to distinguish data between benign and deleterious (ADA Score Only) (Min: 0 / Max: 1) 0.6
37 dbsc_snv_rf threshold_rf Specified threshold to distinguish data between benign and deleterious (RF Score Only) (Min: 0 / Max: 1) 0.6

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High Impact

Report in this section contains only intronic and high impact variants

Original information from ANNOVAR.
Interpreted ANNOVAR data.
Readable version of the interpreted ANNOVAR data.
All data versions with additional information.

Non High Impact

Report in this section contains all variants except intronic and high impact variants

Original information from ANNOVAR.
Interpreted ANNOVAR data.
Readable version of the interpreted ANNOVAR data.
All data versions with additional information.

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